FastQCFastQC Report
Tue 8 Aug 2023
EGAF00001794993

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001794993
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences38980389
Sequences flagged as poor quality0
Sequence length100
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACACATTGGCATCTCGTAT1083650.27799876496871284TruSeq Adapter, Index 5 (97% over 39bp)
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACACATTGGCATCTCGTA646970.1659732025763006TruSeq Adapter, Index 5 (97% over 39bp)

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)