FastQCFastQC Report
Thu 23 Mar 2023
EGAF00001795051

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001795051
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences44604370
Sequences flagged as poor quality0
Sequence length100
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACCAGATCTGATCTCGTA2261270.5069615376251251TruSeq Adapter, Index 7 (97% over 39bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCAGATCTGATCTCGTAT1736930.3894080333384375TruSeq Adapter, Index 7 (97% over 39bp)

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)