FastQCFastQC Report
Sun 5 Mar 2023
EGAF00001795103

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001795103
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences57936501
Sequences flagged as poor quality0
Sequence length100
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACCTGGCATAATCTCGTA2177920.37591500391091964TruSeq Adapter, Index 20 (97% over 38bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCTGGCATAATCTCGTAT2129680.3675886467496544TruSeq Adapter, Index 20 (97% over 38bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)