FastQCFastQC Report
Tue 8 Aug 2023
EGAF00001795133

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001795133
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences38989755
Sequences flagged as poor quality0
Sequence length100
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTATCAGCAATCTCGTAT3348170.8587307101570657TruSeq Adapter, Index 9 (97% over 39bp)
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACTATCAGCAATCTCGTA2915820.7478426063462056TruSeq Adapter, Index 9 (97% over 39bp)

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)