FastQCFastQC Report
Wed 22 Mar 2023
EGAF00001795137

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001795137
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences43036455
Sequences flagged as poor quality0
Sequence length100
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTCTTCACAATCTCGTAT2656790.6173347688604929TruSeq Adapter, Index 8 (97% over 37bp)
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACTCTTCACAATCTCGTA2166650.503445276800796TruSeq Adapter, Index 8 (97% over 37bp)

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)