FastQCFastQC Report
Thu 5 Jan 2023
EGAF00001795143

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001795143
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences40597498
Sequences flagged as poor quality0
Sequence length100
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACTGGCTTCAATCTCGTA1975930.48671225995257145TruSeq Adapter, Index 10 (97% over 39bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTGGCTTCAATCTCGTAT1524760.3755797955824765TruSeq Adapter, Index 10 (97% over 39bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)