FastQCFastQC Report
Sun 2 Apr 2023
EGAF00001795157

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001795157
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21645655
Sequences flagged as poor quality0
Sequence length100
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACAATCCGTCATCTCGTAT1701980.7862917523170355TruSeq Adapter, Index 27 (97% over 38bp)
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACAATCCGTCATCTCGTA1427540.6595041822481232TruSeq Adapter, Index 27 (97% over 38bp)

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)