FastQCFastQC Report
Thu 14 Sep 2023
EGAF00001795165

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001795165
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences34357572
Sequences flagged as poor quality0
Sequence length100
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACAGATGTACATCTCGTA3962471.1533032660165858TruSeq Adapter, Index 2 (97% over 40bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACAGATGTACATCTCGTAT3292660.9583506075458418TruSeq Adapter, Index 2 (97% over 40bp)

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)