FastQCFastQC Report
Sat 13 May 2023
EGAF00001795169

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001795169
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences23996608
Sequences flagged as poor quality0
Sequence length100
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACATCATTCCATCTCGTAT6078462.5330496710201706TruSeq Adapter, Index 1 (97% over 37bp)
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACATCATTCCATCTCGTA3790151.579452395938626TruSeq Adapter, Index 1 (97% over 37bp)

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)