FastQCFastQC Report
Wed 8 Feb 2023
EGAF00001795189

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001795189
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences77492167
Sequences flagged as poor quality0
Sequence length100
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCCGACAACATCTCGTAT4712980.6081879217547239TruSeq Adapter, Index 16 (97% over 38bp)
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACCCGACAACATCTCGTA2900590.37430750904152676TruSeq Adapter, Index 16 (97% over 38bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)