FastQCFastQC Report
Fri 10 Feb 2023
EGAF00001795201

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001795201
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences97106449
Sequences flagged as poor quality0
Sequence length100
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGAACAGGCATCTCGTAT3191090.32861772136266665TruSeq Adapter, Index 9 (97% over 39bp)

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)