FastQCFastQC Report
Thu 9 Feb 2023
EGAF00001795226

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001795226
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences87372356
Sequences flagged as poor quality0
Sequence length100
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCC18246522.088363051581212Illumina Single End PCR Primer 1 (100% over 50bp)
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN1355970.15519439581095879No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)