FastQCFastQC Report
Sat 3 Sep 2022
EGAF00001802697

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001802697
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences260368
Sequences flagged as poor quality0
Sequence length35-301
%GC48

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCGTAGGTGAACCTGCAGAAGGATCATTAGTGAAGATTCAAGGGCCAGC8762233.65313709826092No Hit
TCCGTAGGTGAACCTGCAGAAGGATCATTAGTGAAGATTTGGGCAGGCCA5785422.220088490137037No Hit
TCCGTAGGTGAACCTGCGGAGGGATCATTACAAGTGACCCCGGTCTAACC212838.174199594420205No Hit
TCCGTAGGTGAACCTGCGGAAGGATCATTACAGAGTTCATGCCCGAAAGG134155.152322866097216No Hit
TCCGTAGGTGAACCTGCAGAAGGATCATTAGTGAATGCCTGGGCTGTCAT96823.71858292877773No Hit
TCCGTAGGTGAACCTGCGGAAGGATCATTAACGGAGCCCGGAGGGCGAGG83033.1889479505930067No Hit
TCCGTAGGTGAACCTGCGGAAGGATCATTACAGTATTCTTTTGCCAGCGC68682.637804952989615No Hit
TCCGTAGGTGAACCTGCGGAAGGATCATTATTGATTTGACTATACTTTTG54712.101256682848891No Hit
TCCGTAGGTGAACCTGCAGAAGGATCATTAGTGAAGATTTGGGCAGTCCA49201.8896331346402018No Hit
TCCGTAGGTGAACCTGCGGAAGGATCATTAGTGAATGCCTGGGCTGTCAT26071.0012751182941069No Hit
TCCGTAGGTGAACCTGCGGAAGGATCATTAGTGAAGATTCAAGGGCCAGC25910.9951299698887728No Hit
TCCGTAGGTGAACCTGCGGAAGGATCATTAAAAATTATCGTGTTCCTTGG17120.6575308793707368No Hit
TCCGTAGGTGAACCTGCGGAAGGATCATTAGTGAAGATTTGGGCAGGCCA6890.2646254532046949No Hit
TCCGTAGGTGAACCTGCGCATCGATGAAGAACGCAGC4020.15439685368401648No Hit
TCCGTAGGTGAACCTGCAGAAGGATCATTAGTGAAGCTTCAAGGGCCAGC3680.14133841332268174No Hit
TCCGTAGGTGAACCTGCAGAAGGATCATTATTGAAGATTCAAGGGCCAGC3590.13788176734468138No Hit
TCCGTAGGTGAACCTGCAGAAGGAGCATTAGTGAAGATTCAAGGGCCAGC3180.12213482455601303No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)