FastQCFastQC Report
Sat 3 Sep 2022
EGAF00001802699

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001802699
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences248062
Sequences flagged as poor quality0
Sequence length35-301
%GC53

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCGTAGGTGAACCTGCGGAGGGATCATTACACAAATATGAAGGCGGGCT9611938.747974296748396No Hit
TCCGTAGGTGAACCTGCGGAAGGATCATTGTCGAAACCTGCAAAGCAGAA5509022.20815763800985No Hit
TCCGTAGGTGAACCTGCGGAAGGATCATTGTCGTGACCCTGACCAAAACA3629414.63101966443873No Hit
TCCGTAGGTGAACCTGCAGAAGGATCATTAGTGAAGATTCAAGGGCCAGC113694.583128411445526No Hit
TCCGTAGGTGAACCTGCGGAAGGATCATTATTGATTTGACTATACTTTTG61002.459062653691416No Hit
TCCGTAGGTGAACCTGCGGAAGGATCATTAACGGAGCCCGGAGGGCGAGG30191.2170344510646531No Hit
TCCGTAGGTGAACCTGCAAGAAAATGAACAAGCTTATTATCATTTGCAGA16380.6603187912699244No Hit
TCCGTAGGTGAACCTGCGGAGGGATCATTACACAAAGATGAAGGCGGGCT7810.3148406446775403No Hit
TCCGTAGGTGAACCTGCGGAGGGATCATTACACAAATCTGAAGGCGGGCT5810.23421563963847747No Hit
TCCGTAGGTGAACCTGCGGAGGGATCATTACACAAATATGAAGGCGTGCT4260.1717312607332038No Hit
TCCGTAGGTGAACCTGCGGAGGGATCATTACACGAATATGAAGGCGGGCT3900.1572187598261725No Hit
TCCGTAGGTGAACCTGCTGAGGGATCATTACACAAATATGAAGGCGGGCT3670.1479468842466803No Hit
TCCGTAGGTGAACCTGCGGAGGGATCATTACCCAAATATGAAGGCGGGCT3350.13504688344043023No Hit
TCCGTAGGTGAACCTGCGGAGGGATCATTACACAAATATGAAGGCTGGCT3280.132225008264063No Hit
TCCGTAGGTGAACCTGCGGAGGGATCATTACACAAATATGAAGGCGGGCG3190.1285968830373052No Hit
TCCGTAGGTGAACCTGCTGAGGGATCATTAACTGAGAAGAGCGAAGCCGC3040.12255000765937549No Hit
TCCGTAGGTGAACCTGCGGAGGGATCATTACACAAATATTAAGGCGGGCT2790.11247188202949263No Hit
TCCGTAGGTGAACCTGCGGAAGGATCATTCATTTTTTTTTGACTGTTAAA2770.111665631979102No Hit
TCCGTAGGTGAACCTGCGGAGGGATCATTACACAAAGATGAAGGCGGGCG2490.10037813127363321No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)