FastQCFastQC Report
Fri 2 Sep 2022
EGAF00001802701

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001802701
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences223155
Sequences flagged as poor quality0
Sequence length35-301
%GC51

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCGTAGGTGAACCTGCGGAGGGATCATTACAGGGTCTGACGACTGCCCA2996913.429678922721875No Hit
TCCGTAGGTGAACCTGCGGAAGGATCATTGTCGATGCCTTACATGCAGAC221779.937935515672963No Hit
TCCGTAGGTGAACCTGCGGAAGGATCATTACCGAAGTACAGGCCCTCTCG218749.802155452488181No Hit
TCCGTAGGTGAACCTGCAGAAGGATCATTAGTGAAGATTTGGGCAGGCCA217839.761376621630705No Hit
TCCGTAGGTGAACCTGCGGAAGGATCATTGTCGAAACCTGCACAGCAGAA199958.960139813134369No Hit
TCCGTAGGTGAACCTGCGGAAGGATCATTAAAGAGATAGGGTCCTTCGGG166117.443705048060766No Hit
TCCGTAGGTGAACCTGCAGAAGGATCATTAGTGAAGATTCAAGGGCCAGC162447.279245367569627No Hit
TCCGTAGGTGAACCTGCGGAAGGATCATTAACGGAGCCCGGAGGGCGAGG76193.414218816517667No Hit
TCCGTAGGTGAACCTGCGGAAGGATCATTATTGATTTGACTATACTTTTG72473.2475185409244696No Hit
TCCGTAGGTGAACCTGCGGAAGGATCATTATTGAATTCAAATCATCTGTG66672.987609509085613No Hit
TCCGTAGGTGAACCTGCGGAAGGATCATTAGTGATAAAACTATTATCTTA60982.7326297864712865No Hit
TCCGTAGGTGAACCTGCGGAAGGATCATTTTCTGTGTTGAAAAATATATT39441.7673814165042236No Hit
TCCGTAGGTGAACCTGCGGACCACCTGTTAATCGTGTCCCGGCTCAGTGCATCGATGAAGAACGCAGC10720.4803835898814725No Hit
TCCGTAGGTGAACCTGCGGAGGGATCATTACAGGGTCTGCCGACTGCCCA10400.4660437812282942No Hit
TCCGTAGGTGAACCTGCGGAGGGATCAATAATACAATAAAAAAATCAAAA10130.453944567677175No Hit
TCCGTAGGTGAACCTGCGGAAGGATCATTACCGAAGTACCGGCCCTCTCG9940.44543030628935043No Hit
TCCGTAGGTGAACCTGCGGAGGGATTATTACAGGGTCTGACGACTGCCCA8320.3728350249826354No Hit
TCCGTAGGTGAACCTGCGGAAGGATCATTATTGAATTCACATCATCTGTG3530.15818601420537295No Hit
TCCGTAGGTGAACCTGCGGAGGGATCATTACAGGGTCTTACGACTGCCCA2390.10710044587842532No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)