FastQCFastQC Report
Fri 2 Sep 2022
EGAF00001802703

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001802703
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences209034
Sequences flagged as poor quality0
Sequence length35-301
%GC46

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCGTAGGTGAACCTGCGGAGGGATCATTACACAAATATGAAGGCGGGCT11525055.134571409435786No Hit
TCCGTAGGTGAACCTGCAGAAGGATCATTAGTGAAGATTTGGGCAGGCCA201789.652975114096272No Hit
TCCGTAGGTGAACCTGCGGAGGGATCATTACAAGAACGCCCGGGCTTCGG117335.612962484571888No Hit
TCCGTAGGTGAACCTGCAGAAGGATCATTAGTGAAAGTTTCGGGCCTGCC81003.874967708602428No Hit
TCCGTAGGTGAACCTGCAGAAGGATCATTAGTGAAGATTCAAGGGCCAGC72423.4645081661356527No Hit
TCCGTAGGTGAACCTGCGGAAGGATCATTAATGAATTTAGATTGAACCAT50082.3957825042816No Hit
TCCGTAGGTGAACCTGCGGAGGGGTCATTACACAAATATGAAGGCGGGCT32471.5533358209669241No Hit
TCCGTAGGTGAACCTGCAGAAGGATCATTAGTGAATTGCCTGGGGTTTGA28781.3768095142417023No Hit
TCCGTAGGTGAACCTGCGGAAGGATCATTGACACCAATCCATATCAACCC9900.47360716438474126No Hit
TCCGTAGGTGAACCTGCGGAGGGATCATTACACAAAGATGAAGGCGGGCT9180.43916300697494187No Hit
TCCGTAGGTGAACCTGCGGAGCATCGATGAAGAACGCAGC7560.3616636528028933No Hit
TCCGTAGGTGAACCTGCGGAGGGATCATTACACAAATCTGAAGGCGGGCT6980.3339169704449994No Hit
TCCGTAGGTGAACCTGCGGAAGGATCATTATTGATTCAAAACAAAACAAA6150.2942105112087029No Hit
TCCGTAGGTGAACCTGCGGAAGGATCATTAGTGAAGATTTGGGCAGGCCA5940.28416429863084475No Hit
TCCGTAGGTGAACCTGCGGAGGGATCATTACACAAATATGAAGGCGTGCT4850.23201967144100957No Hit
TCCGTAGGTGAACCTGCGGAGGGATCATTACCCAAATATGAAGGCGGGCT4350.20810011768420447No Hit
TCCGTAGGTGAACCTGCGGAGGGATCATTACACAAATATGAAGGCTGGCT4220.20188103370743518No Hit
TCCGTAGGTGAACCTGCTGAGGGATCATTACACAAATATGAAGGCGGGCT3360.16073940124573036No Hit
TCCGTAGGTGAACCTGCGGAAGGATCATTAGTGAAAGTTTCGGGCCTGCC3330.15930422802032204No Hit
TCCGTAGGTGAACCTGCGGAAGGATCATTAACGGAGCCCGGAGGGCGAGG3030.144952495766239No Hit
TCCGTAGGTGAACCTGCGGAGGGATCATTACACAAATATTAAGGCGGGCT3010.14399571361596677No Hit
TCCGTAGGTGAACCTGCGGAGGGATCATTACACAAATATGAAGGCGGGCG2990.14303893146569457No Hit
TCCGTAGGTGAACCTGCGGAGGGATCATTACACAAATATGCAGGCGGGCT2200.1052460365299425No Hit
TCCGTAGGTGAACCTGCGGAGGGATCATTACACAAATATGACGGCGGGCT2180.1042892543796703No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)