FastQCFastQC Report
Fri 2 Sep 2022
EGAF00001802704

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001802704
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences209034
Sequences flagged as poor quality0
Sequence length38-301
%GC46

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTGAAAGTTG11188553.52478544160281No Hit
GCTGCGTTCTTCATCGATGGGAGAACCAAGAGATCCGTTGTCGAAAGTTG3935618.82755915305644No Hit
GCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTAAAAGTTT115095.505802883741401No Hit
GCTGCGTTCTTCATCGATGCCAGGACCAAGAGATCCGTTGTTGAAAGTTG64323.0770113952754095No Hit
GCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGTTGAAAGTTT51592.4680195566271514No Hit
GCTGCGTTCTTCATCGATGTCAGAACCAAGAGATCCGTTGTTGAAAGTTG23881.1423978874250122No Hit
GCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTCGAAAGTTG13530.6472631246591464No Hit
GCTGCGTTCTTCATCGATGCCTGAACCAAGAGATCCGTTGTTGAAAGTTG13110.6271706995034301No Hit
GCTGCGTTCTTCATCGATGCGAGAGCCAAGATATCCGTTGTTAAGAGTTG10490.5018322378177713No Hit
GCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTGAAAGTTT9600.45925543213065817No Hit
GCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGCTGAAAGTTG8560.40950276031650357No Hit
GCTGCGTTCTTCATCGATGCTCCGCAGGTTCACCTACGGA7610.3640556081785738No Hit
GCTGCGTTCGTCATCGATGCCAGAACCAAGAGATCCGTTGTTGAAAGTTG5850.27985877895461986No Hit
GCTGCGTTCTTCATCGACCCACAAGCCAAGTGATTCCCCGCTTAGGGTTG5790.2769884325038032No Hit
GCTGCGTTCTTCATCGATGCGAGAACCAAGAGATCCGTTGTCGAAAGTTG5220.24972014122104538No Hit
GCTGCGTTCGTCATCGATGGGAGAACCAAGAGATCCGTTGTCGAAAGTTG3320.15882583694518596No Hit
GCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTGAACGTTG3130.1497364065176No Hit
GATGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTGAAAGTTG3030.144952495766239No Hit
GCTGAGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTGAAAGTTG2870.13729823856406134No Hit
GCTGCGTTCTTCATCGATGGGTGAACCAAGAGATCCGTTGTCGAAAGTTG2820.13490628318838085No Hit
GCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTGGAAAGTTG2680.12820880813647542No Hit
GCTGCGTTCTTCATCGATGCCAGAACCAAGATATCCGTTGTTGAAAGTTG2540.12151133308456996No Hit
GCTGCGTTCGTCATCGATGCCAGAACCAAGAGATCCGTTGTGGAAAGTTG2210.1057244276050786No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)