FastQCFastQC Report
Fri 2 Sep 2022
EGAF00001802707

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001802707
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences210396
Sequences flagged as poor quality0
Sequence length35-301
%GC51

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCGTAGGTGAACCTGCAGAAGGATCATTAGTGAAGATTTGGGCAGGCCA11387054.12175136409437No Hit
TCCGTAGGTGAACCTGCGGAAGGATCATTGTCGTATCCTGGAAACAGAAC3591117.06829027167817No Hit
TCCGTAGGTGAACCTGCGGAAGGATCATTGTCGAAACCTGCACAGCAGAA2315511.005437365729387No Hit
TCCGTAGGTGAACCTGCGGAAGGATCATTATTGATTTGACTATACTTTTG41071.9520333086180346No Hit
TCCGTAGGTGAACCTGCGGAAGGATCATTCATAATTTATGCATGTTCTTC28731.3655202570391074No Hit
TCCGTAGGTGAACCTGCGGAAGGATCATTAGTGAAGATTTGGGCAGGCCA8790.41778360805338505No Hit
TCCGTAGGTGAACCTGCAGAAGGAGCATTAGTGAAGATTTGGGCAGGCCA4500.21388239320139169No Hit
TCCGTAGGTGAACCTGCGGAAGGATCATTAACGGAGCCCGGAGGGCGAGG4460.21198121637293488No Hit
TCCGTAGGTGAACCTGCAGAAGGATCATTAGTGAAGATTTGGGCATGCCA4120.19582121333105193No Hit
TCCGTAGGTGAACCTGCAGAAGGATCATTAGTGAAGCTTTGGGCAGGCCA3870.18393885815319683No Hit
TCCGTAGGTGAACGCTGCATCGATGAAGAACGCAGC3830.18203768132474No Hit
TCCGTAGGTGAACCTGCAGAAGGATCATTATTGAAGATTTGGGCAGGCCA3240.153995323105002No Hit
TCCGTAGGTGAACCTGCAGAAGGATCATTAGTGAAGATTTGGGCAGTCCA2970.1411623795129185No Hit
TCCGTAGGTGAACCTGCAGAAGGATCATTAGTGAAGATTTGGGCAGGCAA2700.128329435920835No Hit
TCCGTAGGTGAACCTGCAGAAGGATCATTAGTGAAGATTTTGGCAGGCCA2480.11787296336432253No Hit
TCCGTAGGTGAACCTGCAGAAGGATCATTAGTGAAGATCTGGGCAGGCCA2290.10884237342915265No Hit
TCCGTAGGTGAACCTGCAGAAGGATCATTAGTGAAGATTTGGGCAGGCCC2170.1031388429437822No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)