FastQCFastQC Report
Sat 3 Sep 2022
EGAF00001802710

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001802710
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences359221
Sequences flagged as poor quality0
Sequence length35-301
%GC55

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGCGTTCTTCATCGATGCGAGAGCCAAGATATCCGTTGCCGAGAGTCG15647143.55842225259659No Hit
GCTGCGTTCTTCATCGATGGGAGAACCAAGAGATCCGTTGTCGAAAGTTG7696321.42497237076897No Hit
GCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTGAAAGTTG349559.730778545797712No Hit
GCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGTTGAAAGTTG167734.669270449110714No Hit
GCTGCGTTCTTCATCGATGCCGGAACCAAGAGATCCGTTGTTGAAAGTTT102082.8417046887570607No Hit
GCTGCGTTCTTCATCGATGTGAGAGCCAAGAGATCCGTTGTTGATAGTTA37241.036687721486216No Hit
GCTGCGTTCTTCATCGATGCGTGAGCCAAGATATCCGTTGCCGAGAGTCG18030.501919431213654No Hit
GCTGCGTTCGTCATCGATGCGAGAGCCAAGATATCCGTTGCCGAGAGTCG17780.49495992717574977No Hit
GCTGCGTTCGTCATCGATGGGAGAACCAAGAGATCCGTTGTCGAAAGTTG15290.4256432669582235No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN14050.3911241269302184No Hit
GCTGCGTTCTTCATCGATGCACGAGCCGAGTGATCCACCGCTAAGAGTCG11940.33238591285030666No Hit
GCTGCGTTCTTCATCGATGCGAGAACCAAGAGATCCGTTGTCGAAAGTTG11840.32960211123514493No Hit
GCTGCGTTCTTCATCGATGCGAGAACCAAGATATCCGTTGCCGAGAGTCG7620.21212568307532134No Hit
GCTGCGTTCTTCATCGATGCGAGAGCCAAGATATCCGTTGCCGAGAGTTG6780.18874174950796307No Hit
GCTGCGTTCTTCATCGATGCGAGAGCCAAGATATCCGTTGCCGAGAGTCT5690.15839831190270057No Hit
GCTGCGTTCTTCATCGATGGGTGAACCAAGAGATCCGTTGTCGAAAGTTG5400.15032528721873165No Hit
GCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTCGAAAGTTG5250.1461495847959891No Hit
GCTGCGTTCTTCATCGATGCGAGAGCCGAGATATCCGTTGCCGAGAGTCG5040.14030360140414952No Hit
GCTGCGTTCTTCATCGATGCCAGAGCCAAGATATCCGTTGCCGAGAGTCG4870.13557113865837464No Hit
GCTGCGTTCTTCAACCGGCCGCTCCACAATGGGCAGGTTCACCTACGGA4520.1258278330053087No Hit
GCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTGAAAGTTT4350.12109537025953383No Hit
GCTGCGTTCGTCATCGATGCCAGAACCAAGAGATCCGTTGTTGAAAGTTG4310.11998184961346915No Hit
GCTGCGTTCTTCATCGATGCGAGAGCCAAGATATCCGTTGCCGAAAGTCG4160.1158061471907266No Hit
GCTGCGTTCTTCATCGATGCCTGAACCAAGAGATCCGTTGTTGAAAGTTG4100.11413586622162958No Hit
GCTGCGTTCTTCATCGATGGGAGAACCAAGAGATCCGTTGTCGAAAGTTT4070.11330072573708108No Hit
GCTGCGTTCTTCATCGATGCGAGAGCCAAGATATCCGTTGCCGAGAGTAG4050.11274396541404873No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)