FastQCFastQC Report
Fri 2 Sep 2022
EGAF00001802711

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001802711
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences147296
Sequences flagged as poor quality0
Sequence length35-301
%GC60

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCGTAGGTGAACCTGCGGAAGGATCATTGTCGAAACCTGCAAAGCAGAC7329449.759667608081685No Hit
TCCGTAGGTGAACCTGCGGAAGGATCATTGTCGAAACCTGCACAGCAGAA131478.925564849011513No Hit
TCCGTAGGTGAACCTGCGGAAGGATCATTGTCGTGACCCTGACCAAAACA115397.833885509450359No Hit
TCCGTAGGTGAACCTGCGGAAGGATCATTATCGAGTTTGAATGCGGGCTC100696.83589506843363No Hit
TCCGTAGGTGAACCTGCGGAAGGATCATTTACAACAAAATGAACTTTTCT59094.011650010862481No Hit
TCCGTAGGTGAACCTGCGGAAGGATCATTACAGAATGAAAAGTGCTTAAC36212.458315229198349No Hit
TCCGTAGGTGAACCTGCGGAGGGATCATTACCAGAGTGCCCTAGGCTCTC33762.2919834890288944No Hit
TCCGTAGGTGAACCTGCGGAAGGATCATTATTGATTTGACTATACTTTTG23871.62054638279383No Hit
TCCGTAGGTGAACCTGCGGAAGGATCATTAACGGAGCCCGGAGGGCGAGG10400.7060612643927873No Hit
TCCGTAGGTGAACCTGCGGAAGGATCATTTATAATTCATAAATGTTTTTC8890.60354660004345No Hit
TCCGTAGGTGAACCTGCATCGATGAAGAACGCAGC4040.2742776450141212No Hit
TCCGTAGGTGAACCTGCGGAAGGATCATTATCGAGTTTGCATGCGGGCTC3120.2118183793178362No Hit
TCCGTAGGTGAACCTGCGGAAGGATCATTGTCGAAACCTTCAAAGCAGAC2580.17515750597436452No Hit
TCCGTAGGTGAACCTGCGGAAGGAGCATTGTCGAAACCTGCAAAGCAGAC2580.17515750597436452No Hit
TCCGTAGGTGAACCTGCGGAAGGATCATTGTCGAAACCTGCAAAGCCGAC2570.1744786009124484No Hit
TCCGTAGGTGAACCTGCGGAAGGATCATTGTCGAAACCTGCAACGCAGAC2500.1697262654790354No Hit
TCCGTAGGTGAACCTGCGGAAGGATCATTACAGAATGAACAGTGCTTAAC1810.12288181620682163No Hit
TCCGTAGGTGAACCTGCGGAAGGATCATTGTCGAAACCTGCAAAGCAGAA1810.12288181620682163No Hit
TCCGTAGGTGAACCTGCGGAAGGATCATTGTCGAAACCTGCACAGCAGAC1740.11812948077340865No Hit
TCCGTAGGTGAACCTGCGGAAGGATCATTAATAATTTTAATGTTTGTTTT1620.10998262003041495No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)