FastQCFastQC Report
Sun 11 Sep 2022
EGAF00001809099

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001809099
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1408354
Sequences flagged as poor quality0
Sequence length151
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACCAGCGTTAATCTCGTA392052.7837461320094237TruSeq Adapter, Index 10 (97% over 37bp)
TGTGTAGCAGGAGTTGAAGGTGTGAGACCGCACCAGCGACACAAGATCGG28980.20577212831433006No Hit
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACCAGCGTTAATATCGTA20090.14264879426621432TruSeq Adapter, Index 10 (97% over 37bp)
TGTGTGGGAGGTGACCCCGGTGAGACCGCACCAGCGACACAAGATCGGAA17500.12425853159077901No Hit
TGTGTCAGCAACAAAACACGAAATCTGAGACCGCACCAGCGACACAAGAT17270.1226254194613002No Hit

[FAIL]Adapter Content

Adapter graph