FastQCFastQC Report
Sun 11 Sep 2022
EGAF00001809173

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001809173
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1579106
Sequences flagged as poor quality0
Sequence length151
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACGTCTGTCAATCTCGTA1062466.728237369752252TruSeq Adapter, Index 18 (97% over 38bp)
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACGTCTGTCAATATCGTA100950.6392857730893302TruSeq Adapter, Index 18 (97% over 38bp)
TGTGTCAGCAACAAAACACGAAATCTGAGACCGCACCAGCGACACAAGAT16850.1067059462759308No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)