FastQCFastQC Report
Mon 12 Sep 2022
EGAF00001809199

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001809199
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2301226
Sequences flagged as poor quality0
Sequence length151
%GC47

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACCATCAAGTATCTCGTA369041.603666914940123TruSeq Adapter, Index 9 (97% over 38bp)
TGTGTAGCAGGAGTTGAAGGTGTGAGACCGCACCAGCGACACAAGATCGG38920.16912723913253194No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)