FastQCFastQC Report
Mon 5 Sep 2022
EGAF00001809549

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001809549
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1129681
Sequences flagged as poor quality0
Sequence length151
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACCGCTGATCATCTCGTA244492.164239285249553TruSeq Adapter, Index 2 (97% over 38bp)
TGTGTAGCAGGAGTTGAAGGTGTGAGACCGCACCAGCGACACAAGATCGG11610.10277237556442925No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)