FastQCFastQC Report
Sun 11 Sep 2022
EGAF00001817096

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001817096
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1873257
Sequences flagged as poor quality0
Sequence length151
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATTATAGTACTCCCCTCGCTTTCGGCGGAGGGACCAAGGTGGAGATCA133410.7121820444285007No Hit
CTATAATACTGCTGACAGTAATAAACTGCCACATCCTCAGGCTGCAGGCT90760.4845037279988811No Hit
TTATAGTACTCCCCTCGCTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC78300.4179885621673908No Hit
CTCCTGGGAGTTACCCGATTGGAGGGCGTTATCCACCTTCCACTGTACTT58650.313091049439559No Hit
CTCTAACACTCTCCCCTGTTGAAGCTCTTTGTGACGGGCGAGCTCAGGCC55770.29771675749776993No Hit
CTTTATTACAGATCCAATGATAAGTACTGCTTAGCTTGGTACCAGCAGAA52800.28186201893279994No Hit
GTACTATAATACTGCTGACAGTAATAAACTGCCACATCCTCAGGCTGCAG47310.2525547749187645No Hit
CAATAGGGGTAGGTCCCCTGTGGAAAAAGGGTCAGAGGCCAAAGGATGGG47080.2513269668817466No Hit
GATAAGTACTGCTTAGCTTGGTACCAGCAGAAACCAGGACAGCCTCCTAA44950.2399563967997984No Hit
CAACAGAGGCAGTTCCAGATTTCAACTGCTCATCAGATGGCGGGAAGATG40240.2148130235199975No Hit
TCCTCAGGCTGCAGGCTGCTGATGGTGAGAGTGAAATCTGTCCCAGACCC38330.20461687851693602No Hit
CTCCTAAACTGCTCATTTACTGGGCATCTACCCGGGAATCCGGGGTCCCT36150.19297939364433178No Hit
TTATTACTGTCAGCAGTATTATAGTACTCCCCTCGCTTTCGGCGGAGGGA35080.1872674171242921No Hit
ATCCCAGAGAGGCCAAAGTACAGTGGAAGGTGGATAACGCCCTCCAATCG31780.16965104094099206No Hit
ATAGTACTCCCCTCGCTTTCGGCGGAGGGACCAAGGTGGAGATCAAACGA28790.15368953645975966No Hit
GTAATAAACTGCCACATCCTCAGGCTGCAGGCTGCTGATGGTGAGAGTGA28660.1529955580040539No Hit
ATTAAAGCCAAGGAGGAGGAGGGGGGTGAGGTGAAAGATGAGCTGGAGGA27650.1476038792328015No Hit
CTCTGGGATAGAAGTTATTCAGCAGGCACACAACAGAGGCAGTTCCAGAT26460.14125130721518725No Hit
CCTCCAACATTAGCATAATTAAAGCCAAGGAGGAGGAGGGGGGTGAGGTG26220.13997011622003816No Hit
GTACTGCTTAGCTTGGTACCAGCAGAAACCAGGACAGCCTCCTAAACTGC25320.13516564998822905No Hit
GTTGTGTGCCTGCTGAATAACTTCTATCCCAGAGAGGCCAAAGTACAGTG24910.13297694870484936No Hit
GCGTCAGGGTGCTGCTGAGGCTGTAGGTGCTGTCCTTGCTGTCCTGCTCT24280.129613822342583No Hit
GGCGTAGAGTTTGTGTTTCTCGTAGTCTGCTTTGCTCAGCGTCAGGGTGC23680.12641084485471027No Hit
GTTTAGGAGGCTGTCCTGGTTTCTGCTGGTACCAAGCTAAGCAGTACTTA23550.1257168663990045No Hit
TCCCAGGAGAGTGTCACAGAGCAGGACAGCAAGGACAGCACCTACAGCCT23110.1233680162412312No Hit
GTACAGTGGAAGGTGGATAACGCCCTCCAATCGGGTAACTCCCAGGAGAG22940.12246050595300058No Hit
GTCCTGCTCTGTGACACTCTCCTGGGAGTTACCCGATTGGAGGGCGTTAT22910.12230035707860692No Hit
CCCCTGTTGAAGCTCTTTGTGACGGGCGAGCTCAGGCCCTGATGGGTGAC22560.12043195354401452No Hit
CCACTGTACTTTGGCCTCTCTGGGATAGAAGTTATTCAGCAGGCACACAA21810.1164282316841736No Hit
GTCTTCATCTTCCCGCCATCTGATGAGCAGTTGAAATCTGGAACTGCCTC21620.11541395547968057No Hit
GCTTAGCTTGGTACCAGCAGAAACCAGGACAGCCTCCTAAACTGCTCATT21440.11445306223331875No Hit
GTCCTTGCTGTCCTGCTCTGTGACACTCTCCTGGGAGTTACCCGATTGGA21380.11413276448453148No Hit
GTACTTTGGCCTCTCTGGGATAGAAGTTATTCAGCAGGCACACAACAGAG20860.11135685066170846No Hit
GGCTGTAGGTGCTGTCCTTGCTGTCCTGCTCTGTGACACTCTCCTGGGAG20820.11114331882918362No Hit
GTTGAAGCTCTTTGTGACGGGCGAGCTCAGGCCCTGATGGGTGACTTCGC19880.10612532076484968No Hit
ACCTTCCACTGTACTTTGGCCTCTCTGGGATAGAAGTTATTCAGCAGGCA19110.10201483298874633No Hit
ATAATACTGCTGACAGTAATAAACTGCCACATCCTCAGGCTGCAGGCTGC19100.10196145003061512No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)