FastQCFastQC Report
Thu 9 May 2024
EGAF00001817479

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001817479
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2035435
Total Bases307.3 Mbp
Sequences flagged as poor quality0
Sequence length151
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT70300.34538071714400115No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT42230.20747407802263398No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT21680.10651285843075312No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)