FastQCFastQC Report
Sun 11 Sep 2022
EGAF00001818300

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001818300
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1790675
Sequences flagged as poor quality0
Sequence length151
%GC45

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATACTATATAGGTGGCTATCTATCCCTACCAAGGCTTATATTGAAGTATA35640.1990310916274589No Hit
ATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTCATC35020.19556871012327753No Hit
CCTATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTC31420.17546455945383724No Hit
CTATATAGGTGGCTATCTATCCCTACCAAGGCTTATATTGAAGTATAAAC27270.15228894132101023No Hit
ATTTAGGGCTATTGATATTTAACAAATATCCAGCAAAGGTTTTTCCAGGA25650.14324207351976212No Hit
CTATTAATGATATTAAAATCCCAACTATACCAAAGAATATCCCAATTATC20370.11375598587124967No Hit
TTGATATTCTCTGCATCCTATTTAGGGCTATTGATATTTAACAAATATCC19330.10794812012230025No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)