FastQCFastQC Report
Sun 11 Sep 2022
EGAF00001819298

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001819298
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2365662
Sequences flagged as poor quality0
Sequence length151
%GC44

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTCATC47020.19876043154093864No Hit
ATACTATATAGGTGGCTATCTATCCCTACCAAGGCTTATATTGAAGTATA46950.19846453128130728No Hit
CCTATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTC43150.1824013743298916No Hit
CTATATAGGTGGCTATCTATCCCTACCAAGGCTTATATTGAAGTATAAAC35910.1517968331908785No Hit
ATTTAGGGCTATTGATATTTAACAAATATCCAGCAAAGGTTTTTCCAGGA33860.14313118273024633No Hit
CTATTAATGATATTAAAATCCCAACTATACCAAAGAATATCCCAATTATC27720.11717650281401147No Hit
TTGATATTCTCTGCATCCTATTTAGGGCTATTGATATTTAACAAATATCC24480.1034805479396465No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)