FastQCFastQC Report
Wed 8 May 2024
EGAF00001819532

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001819532
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3888167
Total Bases587.1 Mbp
Sequences flagged as poor quality0
Sequence length151
%GC44

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT111870.28771912317552206No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT60880.15657763671159186No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT49060.12617770790194968No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)