FastQCFastQC Report
Sat 10 Sep 2022
EGAF00001819822

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001819822
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1673373
Sequences flagged as poor quality0
Sequence length151
%GC46

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCCAATAGCGGTGTCTGGTTTCAAATCTGGGGCATTGCAACGCAACACT75700.4523797145047757No Hit
CTTCTATATCAATGCTCTCAGCAGTCGCTAAGTTTAATAACTTAACGCTT61110.365190546279879No Hit
ATCCAAACGCGATCCTTTCTTTCCAAGATAAAGTTATCCTTGAATAAAAA45350.2710095119259125No Hit
ATCATATATGCACTTTATGTGCCGATGGTTTTGCCTACTACGTCAGCCTT43310.2588185658547138No Hit
TGCTAAAGTGGTCCACGATGCCAAACTTGAAAGTTTGATGGAACTTGAAA42140.251826699725644No Hit
TATATGCACTTTATGTGCCGATGGTTTTGCCTACTACGTCAGCCTTAGCA39350.23515378818709276No Hit
CATATATGCACTTTATGTGCCGATGGTTTTGCCTACTACGTCAGCCTTAG37330.22308236119502348No Hit
ATATAGAAGATGACATGAACGCCGCACGTGCTTCGTTATTTGTAACGAGG37110.22176765132460008No Hit
CTTAAGGAGCTTGCTAAAGTGGTCCACGATGCCAAACTTGAAAGTTTGAT36240.2165685713824712No Hit
TTTGTGGATCATGCAATCATATATGCACTTTATGTGCCGATGGTTTTGCC33750.20168844603086103No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT33510.20025421708130825No Hit
GCGTTGATACCACTGCTTAGCGGTGATGAAATTATTGTTGATATGCCTTC33300.19899926675044954No Hit
CTATGTGCACTCCGTCTTGATCCTTATGAATCGAGCGGGGCCACCTCGTT33080.19768455688002612No Hit
TCTTTAAACTTGCCCTTTGGGTAGATAAGTGAGCTAATATGGCGTCTAGT31670.1892584618014035No Hit
ATCCACAAATATATCCTCCTTTTTATTCAAGGATAACTTTATCTTGGAAA30270.18089212626234558No Hit
ACACTATGTGCACTCCGTCTTGATCCTTATGAATCGAGCGGGGCCACCTC30160.1802347713271339No Hit
CTCTTAAGGAGCTTGCTAAAGTGGTCCACGATGCCAAACTTGAAAGTTTG28700.17150987855068775No Hit
ATATATTTGTGGATCATGCAATCATATATGCACTTTATGTGCCGATGGTT27900.1667291153855118No Hit
CCTTAAGAGCTTGATGGTCCACTTGGAAACTGGTGCTTGGCCTTGTGTCC27750.1658327222920413No Hit
ATATATGATTGCATGATCCACAAATATATCCTCCTTTTTATTCAAGGATA26460.15812374168819504No Hit
GCATATATGATTGCATGATCCACAAATATATCCTCCTTTTTATTCAAGGA25440.1520282686525957No Hit
CAAATATATCCTCCTTTTTATTCAAGGATAACTTTATCTTGGAAAGAAAG25070.1498171656887018No Hit
CCAATAGCGGTGTCTGGTTTCAAATCTGGGGCATTGCAACGCAACACTAT23790.14216794462442026No Hit
AAATAATACCACGGACACAAGGCCAAGCACCAGTTTCCAAGTGGACCATC23020.13756646007793838No Hit
GTACATGGGGTTATCATAACCACACACTGAAATTAAACTTGCCCGTTGGG22420.13398088770405642No Hit
ACTTTAGCAAGCTCCTTAAGAGCTTGATGGTCCACTTGGAAACTGGTGCT22250.13296497553145653No Hit
AATATATCCTCCTTTTTATTCAAGGATAACTTTATCTTGGAAAGAAAGGA22180.13254665875450364No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT21610.12914036499931575No Hit
AGCTAATATGGCGTCTAGTGGAAATAATACCACGGACACAAGGCCAAGCA21450.12818421236628055No Hit
GGATATATTTGTGGATCATGCAATCATATATGCACTTTATGTGCCGATGG21040.1257340712441279No Hit
TCTCATATCTTTGCTTAGAGAAAGAAATAGAATCATCCCAAAGAAAATAC20780.1241803232154457No Hit
GCATATCACTAGAATTCTTCATAATTCTAGCGTAGCAGCATTTGGTTTCA20650.1234034492011046No Hit
GTACATGGGGGTTATCATAACCACACACTGAAATTAAACTTGCCCGTTGG20590.1230448919637164No Hit
TTCTAGTGATATGCAATGCCTGGATCTTCGATCGATCCAAACGCGATCCT20390.1218497011724224No Hit
ACGCAACACTATGTGCACTCCGTCTTGATCCTTATGAATCGAGCGGGGCC20380.1217899416328577No Hit
ACTATGTGCACTCCGTCTTGATCCTTATGAATCGAGCGGGGCCACCTCGT19810.11838364787766983No Hit
AAATAGAATCATCCCAAAGAAAATACCACACTCCAATAGCGGTGTCTGGT19450.11623230445334065No Hit
TCACTAGAATTCTTCATAATTCTAGCGTAGCAGCATTTGGTTTCAAGTTC19430.11611278537421124No Hit
CTTATGAATCGAGCGGGGCCACCTCGTTACAAATAACGAAGCACGTGCGG19260.11509687320161135No Hit
GTCTTGATCCTTATGAATCGAGCGGGGCCACCTCGTTACAAATAACGAAG19100.11414072056857617No Hit
GTTTAATAACTTAACGCTTGCTAAGGCTGACGTAGTAGGCAAAACCATCG18220.1088818810868826No Hit
ATGTGCACTCCGTCTTGATCCTTATGAATCGAGCGGGGCCACCTCGTTAC18030.10774644983515332No Hit
TGCTAAGGCTGACGTAGTAGGCAAAACCATCGGCACATAAAGTGCATATA17950.10726837351863572No Hit
CTCCTTAAGAGCTTGATGGTCCACTTGGAAACTGGTGCTTGGCCTTGTGT17900.10696957582081222No Hit
GTGCATATATGATTGCATGATCCACAAATATATCCTCCTTTTTATTCAAG17370.10380232022388315No Hit
CTTTAGCAAGCTCCTTAAGAGCTTGATGGTCCACTTGGAAACTGGTGCTT17140.10242785081389504No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT16740.10003746923130706No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)