FastQCFastQC Report
Sun 11 Sep 2022
EGAF00001821348

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001821348
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1840136
Sequences flagged as poor quality0
Sequence length151
%GC45

[WARN]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATTTAGGGCTATTGATATTTAACAAATATCCAGCAAAGGTTTTTCCAGGA36890.2004743127681867No Hit
ATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTCATC30480.16563993096162458No Hit
TTGATATTCTCTGCATCCTATTTAGGGCTATTGATATTTAACAAATATCC28240.15346691766260756No Hit
ATACTATATAGGTGGCTATCTATCCCTACCAAGGCTTATATTGAAGTATA25660.1394462148449897No Hit
CCTATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTC25160.13672902437645915No Hit
CTATTAATGATATTAAAATCCCAACTATACCAAAGAATATCCCAATTATC24910.13537042914219383No Hit
CTATATAGGTGGCTATCTATCCCTACCAAGGCTTATATTGAAGTATAAAC19620.10662255398514024No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)