FastQCFastQC Report
Sun 11 Sep 2022
EGAF00001821452

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001821452
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1863311
Sequences flagged as poor quality0
Sequence length151
%GC46

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTCATC29160.15649561452704353No Hit
ATACTATATAGGTGGCTATCTATCCCTACCAAGGCTTATATTGAAGTATA26370.1415222686926659No Hit
CCTATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTC26070.13991223150617368No Hit
CTATATAGGTGGCTATCTATCCCTACCAAGGCTTATATTGAAGTATAAAC22450.12048444945583427No Hit
CTATTAATGATATTAAAATCCCAACTATACCAAAGAATATCCCAATTATC19030.10213002552982298No Hit
ATTTAGGGCTATTGATATTTAACAAATATCCAGCAAAGGTTTTTCCAGGA18730.10051998834333077No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)