FastQCFastQC Report
Sun 11 Sep 2022
EGAF00001822949

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001822949
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3380316
Sequences flagged as poor quality0
Sequence length151
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT122120.36126799979646873No Hit
GTTTTAATTAGACAGTCAGATTCCCCTTGTCCGTACCAGTTCTAAGTTGG104000.30766354388169626No Hit
ATGTAGATAAGGGAAGTCGGCAAAATAGATCCGTAACTTCGGGAAAAGGA79700.23577677353241533No Hit
TATCTACATTGTTCTATCAACTAGAGGCTGTTCACCTTGGAGACCTGCTG69770.20640082169832644No Hit
ACTTATACCCCTCCGCTGGGGCAAAATTTACGCCCCAGCGAGTAGGCAGG68500.20264377649900187No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT67610.20001088655616814No Hit
ATCCTAAGAGATAGGGTAATTCCGTTTTAATGTAGGCGCTTGCGCCTCGC66590.19699341718348223No Hit
CGACTAACCCGTGTCCAACTGCTGTTCACACGGAACCTTTCCCCACTTCA65310.19320678895109214No Hit
GTTCTAAGTTGGTTGTTAAACGTACGCCGGACGGCCGAAGCCTGCCAAGG62860.18595894585003295No Hit
GTATCAACGCAGAGTACATGGGCAGAAATCACATTGCGTCAACACCACTT60450.17882943488123595No Hit
ATCTAGTAGCTGGTTCCTGCCGAAGTTTCCCTCAGGATAGCAGTAACGTA58990.174510312053666No Hit
ACTAGAGGCTGTTCACCTTGGAGACCTGCTGCGGTTATGAGTACGACCTG54910.1624404345629225No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT54190.16031045618220308No Hit
GGTCAATCGATCCTAAGAGATAGGGTAATTCCGTTTTAATGTAGGCGCTT53500.1582692269006803No Hit
CTCCTTAGCGGATTCCGACTTCCATGGCCACCGTCCTGCTGTCTAGATGA52920.15655341098287853No Hit
TGATAGAACAATGTAGATAAGGGAAGTCGGCAAAATAGATCCGTAACTTC49310.14587393604621582No Hit
CGATTGACCCGTGTCCAACTGCTGTTCACACGGAACCTTTCCCCACTTCA48040.14211689084689122No Hit
GTGTAACAACTCACCTGCCGAATGAACTAGCCCTGAAAATGGATGGCGCT44310.13108241951344193No Hit
GCCTCTAGTTGATAGAACAATGTAGATAAGGGAAGTCGGCAAAATAGATC43780.1295145187609679No Hit
GTTCTATCAACTAGAGGCTGTTCACCTTGGAGACCTGCTGCGGTTATGAG43560.12886369203352588No Hit
ACTTAATTGAACGTGGACAGTTGAATGAAACGTTATTAGTGGGCCATTTT43420.12844952957060818No Hit
CATCTAGACAGCAGGACGGTGGCCATGGAAGTCGGAATCCGCTAAGGAGT41420.12253292295749865No Hit
GGTATAAGTAACACGCTTGAGCGCCATCCATTTTCAGGGCTAGTTCATTC40530.1199000330146649No Hit
CTCTTAGGATCGATTGACCCGTGTCCAACTGCTGTTCACACGGAACCTTT40440.11963378571707498No Hit
CCCTTAGAGCCAATCCTTTTCCCGAAGTTACGGATCTATTTTGCCGACTT39800.11774047160087991No Hit
CCCCTTGTCCGTACCAGTTCTAAGTTGGTTGTTAAACGTACGCCGGACGG39060.11555132715402938No Hit
ATTCAAGCATAGTTCACCATCTTTCGGGTCCCAACAGCCATGCTCTTACT37970.11232677654988468No Hit
TCGCAATGCTATGTTTTAATTAGACAGTCAGATTCCCCTTGTCCGTACCA37230.11013763210303415No Hit
CTTCCAGCCATTGAACCCTAGCTCCGGACAAACCGATTTCAGGGTGACAG37200.11004888300383753No Hit
GTATAAGTAACACGCTTGAGCGCCATCCATTTTCAGGGCTAGTTCATTCG37140.10987138480544423No Hit
ATCTCTTAGGATCGATTGACCCGTGTCCAACTGCTGTTCACACGGAACCT36730.10865848044975678No Hit
CCTTAGCGGATTCCGACTTCCATGGCCACCGTCCTGCTGTCTAGATGAAC36720.10862889741669123No Hit
GTCTAGATGAACCAACACCTTTTGTGGTGTCTGATGAGCGTATATTCCGG36440.1078005724908559No Hit
TATCAACGCAGAGTACATGGGCAGAAATCACATTGCGTCAACACCACTTT35600.10531559771334988No Hit
TCTTAGGATCGATTGACCCGTGTCCAACTGCTGTTCACACGGAACCTTTC34680.10259395867131947No Hit
GCTAAGGAGTGTGTAACAACTCACCTGCCGAATGAACTAGCCCTGAAAAT33900.10028648209220678No Hit
AGATAAGGGAAGTCGGCAAAATAGATCCGTAACTTCGGGAAAAGGATTGG33840.10010898389381348No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)