FastQCFastQC Report
Sun 11 Sep 2022
EGAF00001823588

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001823588
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1580916
Sequences flagged as poor quality0
Sequence length151
%GC44

[WARN]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATTTAGGGCTATTGATATTTAACAAATATCCAGCAAAGGTTTTTCCAGGA30940.1957093229494799No Hit
ATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTCATC26350.1666755222921395No Hit
CCTATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTC24550.15528971811279033No Hit
ATACTATATAGGTGGCTATCTATCCCTACCAAGGCTTATATTGAAGTATA24220.15320232067990963No Hit
TTGATATTCTCTGCATCCTATTTAGGGCTATTGATATTTAACAAATATCC23690.1498498338937679No Hit
CTATTAATGATATTAAAATCCCAACTATACCAAAGAATATCCCAATTATC20610.1303674578535482No Hit
CTATATAGGTGGCTATCTATCCCTACCAAGGCTTATATTGAAGTATAAAC16880.10677354141523017No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)