FastQCFastQC Report
Sun 11 Sep 2022
EGAF00001825228

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001825228
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1974179
Sequences flagged as poor quality0
Sequence length151
%GC45

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTCATC36310.18392455800613824No Hit
ATACTATATAGGTGGCTATCTATCCCTACCAAGGCTTATATTGAAGTATA34770.1761238469257347No Hit
CCTATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTC33830.17136237392860526No Hit
CTATATAGGTGGCTATCTATCCCTACCAAGGCTTATATTGAAGTATAAAC29070.14725108513463064No Hit
ATTTAGGGCTATTGATATTTAACAAATATCCAGCAAAGGTTTTTCCAGGA27360.13858925659729943No Hit
CTATTAATGATATTAAAATCCCAACTATACCAAAGAATATCCCAATTATC21000.10637333291459386No Hit
TTGATATTCTCTGCATCCTATTTAGGGCTATTGATATTTAACAAATATCC19800.10029485674804565No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)