FastQCFastQC Report
Wed 8 May 2024
EGAF00001825230

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001825230
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1765203
Total Bases266.5 Mbp
Sequences flagged as poor quality0
Sequence length151
%GC45

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTCATC33470.18960992021880768No Hit
ATACTATATAGGTGGCTATCTATCCCTACCAAGGCTTATATTGAAGTATA30910.17510733892929028No Hit
CCTATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTC30330.171821597855884No Hit
CTATATAGGTGGCTATCTATCCCTACCAAGGCTTATATTGAAGTATAAAC25910.1467819848482016No Hit
ATTTAGGGCTATTGATATTTAACAAATATCCAGCAAAGGTTTTTCCAGGA23930.13556514463209046No Hit
CTATTAATGATATTAAAATCCCAACTATACCAAAGAATATCCCAATTATC19800.11216840216111122No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)