FastQCFastQC Report
Wed 8 May 2024
EGAF00001825552

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001825552
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3263173
Total Bases492.7 Mbp
Sequences flagged as poor quality0
Sequence length151
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGGATCTTGGGAGCGG40440.12392845858923202No Hit
GATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAA37440.1147349527591703No Hit
CTCTTAATCATGGCCTCAGTTCCGAAAACCAACAAAATAGAACCGCGGTC35700.10940271937773449No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)