FastQCFastQC Report
Thu 1 Sep 2022
EGAF00001825763

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001825763
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1664
Sequences flagged as poor quality0
Sequence length151
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT120.7211538461538461No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT70.4206730769230769No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT50.3004807692307693No Hit
TCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGCGGCGGCGTTATT40.2403846153846154No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT30.18028846153846154No Hit
GTGTTCTGCTGGGGAGGTCGGCGCTCCGGGTGTAGCTGGGGTCGCAGGTT30.18028846153846154No Hit
TCTTCTGGCTGCTGGTCAAGAGCCCCGAGCTGGCCGCCCAGCCCAGCACA20.1201923076923077No Hit
AAGCAATTGTGAATGGGAGCTCACTCATGATTTGGCTCTCTGTTTGTCTG20.1201923076923077No Hit
ATTGTGAGTAATATAGATTGGCGCTAGTAGATCACAGAACAACCGCCGCA20.1201923076923077No Hit
CAATTACAGGGCCTCGAAAGAGTCCTGTATTGTTATTTTTCGTCACTACC20.1201923076923077No Hit
ATTTTGATGGTTGGATTATACCCAGTTCCCCAGAAGTGTGAGAAATATAA20.1201923076923077No Hit
TTGTTACTCAGTATACATGAAATTTTTTGCAGGAAAAGAAACCAGAAATA20.1201923076923077No Hit
ATCTATAGATTAATTTGGGGAGAATTGCAGTCTTAACTATATTGTGTTTC20.1201923076923077No Hit
GATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAA20.1201923076923077No Hit
CATCTTTAATGATGAACTGTCGCCAAGTCAGCTGAAGTCATTGGCAACAG20.1201923076923077No Hit
ATCTAGAGTCACCAAAGCCGCCGGCGCCCGCCCCCCGGCCGGGGCCGGAG20.1201923076923077No Hit
TTCTAGTGCTCTCCAGAATATAAAAAGGCTTCTGCAGAACCCCAAAGTGA20.1201923076923077No Hit
CCTATTAATCCACCCTTTCCCCCAGGCCCCTGTCCTCCTCCCCCAGGAGC20.1201923076923077No Hit
ATATAATGTAATGTTTTGTAAGTTATTAATTTATATATCTAACATTGCCT20.1201923076923077No Hit
ACTCCATCATGAAGTGTGACGTGGACATCCGCAAAGACCTGTACGCCAAC20.1201923076923077No Hit
GTTTAGTAGAGATGGGGTTCTACCATGTTGGCCAGGCTGGTCTTGAACTC20.1201923076923077No Hit
GTGTATGGTTATCATTTGTTTTGAGGTTAGTTTGATTAGTCATTGTTGGG20.1201923076923077No Hit
CTCCAGTATAATTTAACTCAGTTATACTTTCATTTCAAGATATCTTCAAG20.1201923076923077No Hit
ACCAAAGCCGCCGGCGCCCGCCCCCCGGCCGGGGCCGGAGAGGGGCTGAC20.1201923076923077No Hit
ACTTCACACACCTCCACTATCACCCGGCCAGCCACCTTCTCGCCACTGCC20.1201923076923077No Hit
ATATATAGGTGTAATGGGACAGATATATACAAGGACAAAGAATCTACCGT20.1201923076923077No Hit
GTCCTTGCTGGTGCATGCGTCGTCGGCCTCTGGGCAGCAGGTTTACAAAG20.1201923076923077No Hit
TCACTAGGCACACACCTCTACCACTAAGGAACATTATGGTAAATCTGAAT20.1201923076923077No Hit
GTTCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT20.1201923076923077No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)