FastQCFastQC Report
Wed 8 May 2024
EGAF00001825990

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001825990
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1501946
Total Bases226.7 Mbp
Sequences flagged as poor quality0
Sequence length151
%GC47

[WARN]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT24410.16252248749289255No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT15060.1002699164950005No Hit
GTATAAGGTGATCGCAGGTTGTGCAATCATTGCTCAAAAGGGTGTACACC15040.10013675591532586No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)