FastQCFastQC Report
Sun 11 Sep 2022
EGAF00001825996

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001825996
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1666220
Sequences flagged as poor quality0
Sequence length151
%GC49

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT26060.1564019157134112No Hit
TTATAACTATGTCTCCTGGTTCCAACAACACCCAGGCAAAGCCCCCAAAC19800.11883184693497857No Hit
TCCTAGGTCAGCCCAAGGCTGCCCCCTCGGTCACTCTGTTCCCACCCTCC18300.10982943428838929No Hit
ATAATACACGGCCGTGTCGTCAGATCTCAGCCTCCTCAACTCCATGTAGG18290.10976941820407869No Hit
ACTATATGCATTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATG17090.10256748808680725No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)