FastQCFastQC Report
Mon 5 Sep 2022
EGAF00001826003

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001826003
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1628190
Sequences flagged as poor quality0
Sequence length151
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT92000.5650446200996198No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT64870.3984178750637211No Hit
ACCTATACTCGGCCGTCGGGGCAAGTGCCATGCTCCGATGAGTAGGAGGA56200.3451685614086808No Hit
TACCTACATTGTTCTATTGACCAGAGGCTGTTCACCTTGGAGACCTGATG46130.2833207426651681No Hit
ATCCTAAGAGATGGGGAAGCCCTGTTTCAAGGGCGCACTTCGCGCGATCA44320.27220410394364297No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT38480.23633605414601488No Hit
GTACTCGGTCCTCCAGATTTTCAAGGGCCGCCGAAGGCGCACCGGACACC36970.22706195222916248No Hit
GTATCAACGCAGAGTACATGGGCAGAAATCACATTGCGTCAGCATCCGCA33930.20839091260847936No Hit
GTTCTATTGACCAGAGGCTGTTCACCTTGGAGACCTGATGCGGTTATGAG30510.1873859930352109No Hit
CCCCTAGGCCCAGCCCTCAGAGCCAATCCTTTTCCCGAAGTTACGGATCC30040.18449935204122367No Hit
GGTTAATATTCCCGAACCGGGACGTGGCGGCGGACGGCAACGTTAGGAAA30020.18437651625424553No Hit
CCTAGGGAGAGCCCCCACGAGGGGAGCGTCCTGCGTCCGTCGCCCGATCG27780.17061890811268954No Hit
AGTATAGGTTGCGCGCTTCAGCGCCATCCATTTTCGGGGCTAGTTGATTC26120.16042353779350077No Hit
CCCCTTGTCCGTACCAGTTCTGAGTCAGCTGTTCGCCGCCTAGGGAGAGC25150.15446600212505912No Hit
GTACATGGGCAGAAATCACATTGCGTCAGCATCCGCAGGGACCATCGCAA25120.15428174844459183No Hit
GAGTAGGAGGACGCGGGGGTTGTTGCGAAACCTTGGGCGCGAGCCTGGGT24720.15182503270502828No Hit
TATCAACGCAGAGTACATGGGCAGAAATCACATTGCGTCAGCATCCGCAG23820.14629742229101025No Hit
GAGTACGACCGGGCGTGAACGGTACTCGGTCCTCCAGATTTTCAAGGGCC23490.14427063180587033No Hit
ATATTAACCCGATTCCCTTTCGATGATCGCGCGAAGTGCGCCCTTGAAAC23140.1421210055337522No Hit
GTTATGAGTACGACCGGGCGTGAACGGTACTCGGTCCTCCAGATTTTCAA22570.13862018560487413No Hit
TCGCAATGCTTTGTTTTAATTAAACAGTCGGATTCCCCTTGTCCGTACCA22040.13536503724995239No Hit
GTCGTACTCATAACCGCATCAGGTCTCCAAGGTGAACAGCCTCTGGTCAA21440.13167996364060708No Hit
GTTTCAAGGGCGCACTTCGCGCGATCATCGAAAGGGAATCGGGTTAATAT21220.1303287699838471No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT20770.1275649647768381No Hit
ACCGAGTACCGTTCACGCCCGGTCGTACTCATAACCGCATCAGGTCTCCA20700.12713503952241445No Hit
AGCCTGGGTGGACCGGCCCCCGGTGCAGATCTTGGTGGTAGTAGCAAATA20530.12609093533309995No Hit
ATGTAGGTAAGGGAAGTCGGCAAAATGGATCCGTAACTTCGGGAAAAGGA20380.12516966693076362No Hit
ACTCATAACCGCATCAGGTCTCCAAGGTGAACAGCCTCTGGTCAATAGAA20270.12449407010238364No Hit
TACCAGTTCTGAGTCAGCTGTTCGCCGCCTAGGGAGAGCCCCCACGAGGG20180.12394130906098183No Hit
GACCAGAGGCTGTTCACCTTGGAGACCTGATGCGGTTATGAGTACGACCG20030.1230200406586455No Hit
TCCTAACGTTGCCGTCCGCCGCCACGTCCCGGTTCGGGAATATTAACCCG19880.12209877225630916No Hit
ACATTGTTCTATTGACCAGAGGCTGTTCACCTTGGAGACCTGATGCGGTT19800.12160742910839643No Hit
TCCCTTACCTACATTGTTCTATTGACCAGAGGCTGTTCACCTTGGAGACC19080.11718534077718203No Hit
GATTAAGACAGCAGGACGGTGGTCATGGAAGTCGAAATCCGCTAAGGAGT18600.11423728188970574No Hit
ATTTCAGGGTGGGCAGGCTGTTAAAAAGAAAAGATAACTCTTCCCGGGGC18310.11245616297852216No Hit
CTCTTAGGATCGACTAACCCATGTCCAAGTGCTGTTCACATGGAACCTTT18250.11208765561758763No Hit
GTCCGTACCAGTTCTGAGTCAGCTGTTCGCCGCCTAGGGAGAGCCCCCAC18020.11067504406733857No Hit
TCCAAGTGCTGTTCACATGGAACCTTTCCCCACTTCAGTCTTCAAAGTTC17880.10981519355849133No Hit
GTGTAACAACTCACCTGCCGAATCAACTAGCCCCGAAAATGGATGGCGCT17160.10539310522727692No Hit
TAATTAAACAGTCGGATTCCCCTTGTCCGTACCAGTTCTGAGTCAGCTGT17040.10465609050540785No Hit
TTGTTCTATTGACCAGAGGCTGTTCACCTTGGAGACCTGATGCGGTTATG17000.10441041893145149No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT16920.10391907578353878No Hit
CAATAGAACAATGTAGGTAAGGGAAGTCGGCAAAATGGATCCGTAACTTC16850.10348915052911516No Hit
GTTCTGAGTCAGCTGTTCGCCGCCTAGGGAGAGCCCCCACGAGGGGAGCG16760.10293638948771335No Hit
CCCTGAAATCGGTTCAACCGGAGATAGGGTCCAGCGGCTGGAAGAGCACC16660.10232221055282247No Hit
CTATTGACCAGAGGCTGTTCACCTTGGAGACCTGATGCGGTTATGAGTAC16440.1009710168960625No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)