FastQCFastQC Report
Sun 11 Sep 2022
EGAF00001826311

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001826311
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1872054
Sequences flagged as poor quality0
Sequence length151
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT98480.5260532014567956No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT70830.3783544705441189No Hit
GTCTAGGACGCACCGGATGCAACGAAAGTGTTGCACTTTGCCTACCATTG42380.22638235862854383No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT39120.2089683310417328No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT34460.18407588669984948No Hit
ATCTATAACCTTGAAATCGGATTATCCGGAGCTAAGGTTCAATGGTAGGC34180.182580203348835No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT33060.17659746994477724No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT26030.13904513438180735No Hit
GTCCTAGACAGTCCTTGAAAAACCGACGGAACGTATTACTCTCATGCCTG25320.135252508741735No Hit
GTTTTAATTAGACAGTCAGATTCCCCTTGTCCGTACCAGTTCTAAGTTGG24650.13167355215180757No Hit
GTATTACTCTCATGCCTGGTCGTACTCATAACCGCAGCAGGTCTCCTAGG20050.10710161138514167No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)