FastQCFastQC Report
Sat 10 Sep 2022
EGAF00001826558

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001826558
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1493085
Sequences flagged as poor quality0
Sequence length151
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATTTAGGGCTATTGATATTTAACAAATATCCAGCAAAGGTTTTTCCAGGA24340.16301818047867334No Hit
CCTATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTC21390.14326043058499682No Hit
ATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTCATC20530.13750054417531488No Hit
CTATATAGGTGGCTATCTATCCCTACCAAGGCTTATATTGAAGTATAAAC19780.13247738742268525No Hit
ATACTATATAGGTGGCTATCTATCCCTACCAAGGCTTATATTGAAGTATA18920.12671750101300328No Hit
CTATTAATGATATTAAAATCCCAACTATACCAAAGAATATCCCAATTATC15400.10314215198732825No Hit
ATATAAGCCTTGGTAGGGATAGATAGCCACCTATATAGTATAGCTTCCCA15110.10119986470964479No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)