FastQCFastQC Report
Sun 11 Sep 2022
EGAF00001826570

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001826570
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1935262
Sequences flagged as poor quality0
Sequence length151
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTCATC41270.2132527792102568No Hit
ATACTATATAGGTGGCTATCTATCCCTACCAAGGCTTATATTGAAGTATA38540.19914616212171787No Hit
CCTATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTC36880.19056851217044515No Hit
ATTTAGGGCTATTGATATTTAACAAATATCCAGCAAAGGTTTTTCCAGGA34830.179975631206524No Hit
CTATATAGGTGGCTATCTATCCCTACCAAGGCTTATATTGAAGTATAAAC32870.16984780355321397No Hit
CTATTAATGATATTAAAATCCCAACTATACCAAAGAATATCCCAATTATC24540.12680453602664654No Hit
TTGATATTCTCTGCATCCTATTTAGGGCTATTGATATTTAACAAATATCC22980.11874361197605286No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)