FastQCFastQC Report
Wed 8 May 2024
EGAF00001826949

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001826949
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences937846
Total Bases141.6 Mbp
Sequences flagged as poor quality0
Sequence length151
%GC45

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT62060.6617291111760353No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT37630.401238582880345No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT28520.3041010997541174No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)