FastQCFastQC Report
Sat 3 Sep 2022
EGAF00001828375

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001828375
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences567875
Sequences flagged as poor quality0
Sequence length151
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT36850.648910411622276No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT24980.4398855381906229No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT17820.31380145278450366No Hit
TACCTACATTGTTCTATCAACTAGAGGCTTTTCACCTTGGAGACCTGCTG10860.1912392692053709No Hit
ATCCTAAGCCGCAGGGTAGCTCCGCGTTAAAGCGCGCACTCGTGCGCCGC7830.13788245652652434No Hit
GTTTTAATTAGACAGTCAGATTCCCCTTGTCCGTACCAGTTCTAAGTTGG7550.13295179396874313No Hit
GTATCAACGCAGAGTACATGGGCAGAAATCACATTGCGTCAACACCACTT7480.13171912832929783No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT6940.12220999339643407No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT6280.11058771736737838No Hit
GTTCTATCAACTAGAGGCTTTTCACCTTGGAGACCTGCTGCGGTTATGGG5690.100198106977768No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)