FastQCFastQC Report
Sun 11 Sep 2022
EGAF00001829224

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001829224
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1984682
Sequences flagged as poor quality0
Sequence length151
%GC45

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTCATC36430.18355585428799173No Hit
ATACTATATAGGTGGCTATCTATCCCTACCAAGGCTTATATTGAAGTATA34180.17221902551643034No Hit
CCTATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTC32170.16209145848050216No Hit
CTATATAGGTGGCTATCTATCCCTACCAAGGCTTATATTGAAGTATAAAC28240.14228979755950827No Hit
ATTTAGGGCTATTGATATTTAACAAATATCCAGCAAAGGTTTTTCCAGGA27190.13699927746611296No Hit
CTATTAATGATATTAAAATCCCAACTATACCAAAGAATATCCCAATTATC20940.10550808643399799No Hit
TTGATATTCTCTGCATCCTATTTAGGGCTATTGATATTTAACAAATATCC20080.10117489854797898No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)