FastQCFastQC Report
Wed 8 May 2024
EGAF00001829486

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001829486
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3500174
Total Bases528.5 Mbp
Sequences flagged as poor quality0
Sequence length151
%GC47

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT70620.20176139814763494No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT44420.12690797657487887No Hit
ATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGGATCTTGGGAGCGG35270.10076641904088197No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)