FastQCFastQC Report
Sun 11 Sep 2022
EGAF00001829970

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001829970
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1824344
Sequences flagged as poor quality0
Sequence length151
%GC47

[WARN]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATAAGGTGATCGCAGGTTGTGCAATCATTGCTCAAAAGGGTGTACACC20150.11045066062102323No Hit
GTACTAGGCATCGTCATCCAATGCGACGAGTCCTACACTATCTTGGATAT19760.108312905899326No Hit
GCCTAGTACTGTGCGCCAATTAGGTCGTCATTGCGCCAGCTCGTCAGCGC18570.10179001328696781No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)