FastQCFastQC Report
Sun 11 Sep 2022
EGAF00001831454

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001831454
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1998967
Sequences flagged as poor quality0
Sequence length151
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTCATC41850.20935813347594032No Hit
CCTATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTC37470.18744681628060894No Hit
ATACTATATAGGTGGCTATCTATCCCTACCAAGGCTTATATTGAAGTATA37460.18739679044226343No Hit
ATTTAGGGCTATTGATATTTAACAAATATCCAGCAAAGGTTTTTCCAGGA34350.17183875471681123No Hit
CTATATAGGTGGCTATCTATCCCTACCAAGGCTTATATTGAAGTATAAAC30200.15107803180342647No Hit
TTGATATTCTCTGCATCCTATTTAGGGCTATTGATATTTAACAAATATCC24320.12166283885626926No Hit
CTATTAATGATATTAAAATCCCAACTATACCAAAGAATATCCCAATTATC24180.12096247711943219No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)